PolymerStructure Class Template Reference

#include <polymer_structure.hpp>

Inheritance diagram for PolymerStructure:

List of all members.

Public Types
typedef cto_type::chemical_type_system	chemical_type_system
typedef cto_type::dictionary	dictionary
typedef cto_type::id_type	id_type
typedef btk_seq_type::value_type	value_type
typedef btk_seq_type::iterator	iterator
typedef btk_seq_type::const_iterator	const_iterator
typedef btk_seq_type::reverse_iterator	reverse_iterator
typedef btk_seq_type::const_reverse_iterator	const_reverse_iterator
typedef btk_seq_type::reference	reference
typedef btk_seq_type::const_reference	const_reference
typedef btk_seq_type::pointer	pointer
typedef btk_seq_type::const_pointer	const_pointer
typedef btk_seq_type::difference_type	difference_type
typedef btk_seq_type::size_type	size_type
typedef value_type	monomer_type
typedef iterator	monomer_iterator
typedef reverse_iterator	reverse_monomer_iterator
typedef const_iterator	const_monomer_iterator
typedef const_reverse_iterator	const_reverse_monomer_iterator
typedef id_type	structure_id_type
typedef monomer_type::id_type	monomer_id_type
Public Member Functions
	PolymerStructure (self_type const &source)
virtual	~PolymerStructure ()
size_type	num_monomers () const
monomer_iterator	polymer_begin ()
const_monomer_iterator	polymer_begin () const
reverse_monomer_iterator	polymer_rbegin ()
const_reverse_monomer_iterator	polymer_rbegin () const
monomer_iterator	polymer_end ()
const_monomer_iterator	polymer_end () const
reverse_monomer_iterator	polymer_rend ()
const_reverse_monomer_iterator	polymer_rend () const
virtual void	set_chemical_type_system (chemical_type_system const &cts)
virtual std::ostream &	print (std::ostream &os, size_type first_atom_num=1, size_type first_group_num=1, char chain_id= ' ') const
virtual dictionary const &	get_dictionary () const=0
virtual dictionary &	get_dictionary ()=0
Protected Member Functions
	PolymerStructure (size_type n=0, const_reference t=value_type(), id_type type=id_type())
template<typename MonomerIterator>
	PolymerStructure (MonomerIterator i, MonomerIterator j, id_type type=id_type())
self_type const &	operator= (self_type const &rhs)
void	swap (self_type &b)
bool	operator== (self_type const &rhs) const
bool	operator!= (self_type const &rhs) const
bool	operator< (self_type const &rhs) const

template<typename MonomerType, typename ChemicalTypeSystemType, typename DictionaryType, typename StorageStrategy>
class BTK::MOLECULES::PolymerStructure< MonomerType, ChemicalTypeSystemType, DictionaryType, StorageStrategy >

---

Member Typedef Documentation

typedef cto_type ::chemical_type_system chemical_type_system

Reimplemented from ChemicallyTypedObject.

Reimplemented in Polymer.

typedef cto_type ::dictionary dictionary

Reimplemented from ChemicallyTypedObject.

Reimplemented in Polymer.

typedef cto_type ::id_type id_type

Reimplemented from ChemicallyTypedObject.

Reimplemented in Polymer.

typedef btk_seq_type ::value_type value_type

Reimplemented from BTKSequence< MonomerType, StorageStrategy >.

Reimplemented in Polymer.

typedef btk_seq_type ::iterator iterator

Reimplemented from BTKSequence< MonomerType, StorageStrategy >.

Reimplemented in Polymer.

typedef btk_seq_type ::const_iterator const_iterator

Reimplemented from BTKSequence< MonomerType, StorageStrategy >.

Reimplemented in Polymer.

typedef btk_seq_type ::reverse_iterator reverse_iterator

Reimplemented from BTKSequence< MonomerType, StorageStrategy >.

Reimplemented in Polymer.

typedef btk_seq_type ::const_reverse_iterator const_reverse_iterator

Reimplemented from BTKSequence< MonomerType, StorageStrategy >.

Reimplemented in Polymer.

typedef btk_seq_type ::reference reference

Reimplemented from BTKSequence< MonomerType, StorageStrategy >.

Reimplemented in Polymer.

typedef btk_seq_type ::const_reference const_reference

Reimplemented from BTKSequence< MonomerType, StorageStrategy >.

Reimplemented in Polymer.

typedef btk_seq_type ::pointer pointer

Reimplemented from BTKSequence< MonomerType, StorageStrategy >.

Reimplemented in Polymer.

typedef btk_seq_type ::const_pointer const_pointer

Reimplemented from BTKSequence< MonomerType, StorageStrategy >.

Reimplemented in Polymer.

typedef btk_seq_type ::difference_type difference_type

Reimplemented from BTKSequence< MonomerType, StorageStrategy >.

Reimplemented in Polymer.

typedef btk_seq_type ::size_type size_type

Reimplemented from BTKSequence< MonomerType, StorageStrategy >.

Reimplemented in Polymer.

typedef value_type monomer_type

Reimplemented in Polymer.

typedef iterator monomer_iterator

Reimplemented in Polymer.

typedef reverse_iterator reverse_monomer_iterator

Reimplemented in Polymer.

typedef const_iterator const_monomer_iterator

Reimplemented in Polymer.

typedef const_reverse_iterator const_reverse_monomer_iterator

Reimplemented in Polymer.

typedef id_type structure_id_type

Reimplemented in Polymer.

typedef monomer_type::id_type monomer_id_type

Reimplemented in Polymer.

---

Constructor & Destructor Documentation

PolymerStructure

(

self_type const &

source

)

virtual ~PolymerStructure

(

)

[virtual]

PolymerStructure	(	size_type	n = 0,
		const_reference	t = value_type(),
		id_type	type = id_type()
	)			[protected]

PolymerStructure	(	MonomerIterator	i,
		MonomerIterator	j,
		id_type	type = id_type()
	)			[protected]

---

Member Function Documentation

size_type num_monomers

(

)

const

monomer_iterator polymer_begin

(

)

const_monomer_iterator polymer_begin

(

)

const

reverse_monomer_iterator polymer_rbegin

(

)

const_reverse_monomer_iterator polymer_rbegin

(

)

const

monomer_iterator polymer_end

(

)

const_monomer_iterator polymer_end

(

)

const

reverse_monomer_iterator polymer_rend

(

)

const_reverse_monomer_iterator polymer_rend

(

)

const

virtual void set_chemical_type_system

(

chemical_type_system const &

cts

)

[virtual]

virtual std::ostream& print	(	std::ostream &	os,
		size_type	first_atom_num = 1,
		size_type	first_group_num = 1,
		char	chain_id = ' '
	)			const [virtual]

virtual dictionary const& get_dictionary

(

)

const [pure virtual]

Implements ChemicallyTypedObject.

Implemented in Polymer.

virtual dictionary& get_dictionary

(

)

[pure virtual]

Implements ChemicallyTypedObject.

Implemented in Polymer.

self_type const& operator=

(

self_type const &

rhs

)

[protected]

void swap

(

self_type &

b

)

[protected]

bool operator==

(

self_type const &

rhs

)

const [protected]

bool operator!=

(

self_type const &

rhs

)

const [protected]

bool operator<

(

self_type const &

rhs

)

const [protected]

---

The documentation for this class was generated from the following file:

• polymer_structure.hpp

---