| _storage | BTKContainer | [protected] |
| atom_id_type typedef | Polymer | |
| atom_iterator typedef | Polymer | |
| atom_type typedef | Polymer | |
| begin() | BTKContainer | [protected] |
| begin() const | BTKContainer | [protected] |
| BTKContainer(self_type const &source) | BTKContainer | [protected] |
| BTKContainer(size_type n=0, const_reference t=value_type()) | BTKContainer | [protected] |
| BTKContainer(InputIterator i, InputIterator j) | BTKContainer | [protected] |
| BTKSequence(self_type const &source) | BTKSequence< MonomerType, StorageStrategy > | [protected] |
| BTKSequence(size_type n=0, const_reference t=value_type()) | BTKSequence< MonomerType, StorageStrategy > | [protected] |
| BTKSequence(InputIterator i, InputIterator j) | BTKSequence< MonomerType, StorageStrategy > | [protected] |
| chain_id() const | Polymer | |
| chemical_type_system typedef | Polymer | |
| ChemicallyTypedObject(chemical_type_system const &ts=chemical_type_system(), id_type t=id_type()) | ChemicallyTypedObject | |
| ChemicallyTypedObject(self_type const &src) | ChemicallyTypedObject | |
| clear() | BTKSequence< MonomerType, StorageStrategy > | [protected, virtual] |
| const_atom_iterator typedef | Polymer | |
| const_iterator typedef | Polymer | |
| const_monomer_iterator typedef | Polymer | |
| const_pointer typedef | Polymer | |
| const_reference typedef | Polymer | |
| const_reverse_atom_iterator typedef | Polymer | |
| const_reverse_iterator typedef | Polymer | |
| const_reverse_monomer_iterator typedef | Polymer | |
| dictionary typedef | Polymer | |
| difference_type typedef | Polymer | |
| empty() const | BTKContainer | [protected] |
| end() | BTKContainer | [protected] |
| end() const | BTKContainer | [protected] |
| erase(iterator p) | BTKSequence< MonomerType, StorageStrategy > | [protected, virtual] |
| erase(iterator p, iterator q) | BTKSequence< MonomerType, StorageStrategy > | [protected, virtual] |
| front() | BTKSequence< MonomerType, StorageStrategy > | [protected] |
| front() const | BTKSequence< MonomerType, StorageStrategy > | [protected] |
| get_chemical_type_system() const | ChemicallyTypedObject | |
| get_chemical_type_system() | ChemicallyTypedObject | |
| get_dictionary() const | Polymer | [virtual] |
| get_dictionary() | Polymer | [virtual] |
| id_type typedef | Polymer | |
| insert(iterator p, InputIterator i, InputIterator j) | Polymer | |
| BTK::MOLECULES::PolymerStructure::insert(iterator p, const_reference t) | BTKSequence< MonomerType, StorageStrategy > | [virtual] |
| BTK::MOLECULES::PolymerStructure::insert(iterator p, size_type n, const_reference t) | BTKSequence< MonomerType, StorageStrategy > | [virtual] |
| iterator typedef | Polymer | |
| max_size() const | BTKContainer | [protected] |
| monomer_id_type typedef | Polymer | |
| monomer_iterator typedef | Polymer | |
| monomer_type typedef | Polymer | |
| name() const | ChemicallyTypedObject | |
| num_atoms() const | Polymer | |
| num_monomers() const | PolymerStructure | |
| operator!=(self_type const &rhs) const | Polymer | |
| BTK::MOLECULES::PolymerStructure::operator!=(self_type const &rhs) const | PolymerStructure | [protected] |
| BTK::UTILITY::ChemicallyTypedObject::operator!=(self_type const &rhs) const | ChemicallyTypedObject | [protected] |
| BTK::UTILITY::BTKSequence< MonomerType, StorageStrategy >::operator!=(self_type const &rhs) const | BTKContainer | [protected] |
| operator<(self_type const &rhs) const | Polymer | |
| BTK::MOLECULES::PolymerStructure::operator<(self_type const &rhs) const | PolymerStructure | [protected] |
| BTK::UTILITY::ChemicallyTypedObject::operator<(self_type const &rhs) const | ChemicallyTypedObject | [protected] |
| BTK::UTILITY::BTKSequence< MonomerType, StorageStrategy >::operator<(self_type const &rhs) const | BTKContainer | [protected] |
| operator=(self_type const &rhs) | Polymer | |
| BTK::MOLECULES::PolymerStructure::operator=(self_type const &rhs) | PolymerStructure | [protected] |
| BTK::UTILITY::ChemicallyTypedObject::operator=(self_type const &src) | ChemicallyTypedObject | [protected] |
| BTK::UTILITY::BTKSequence< MonomerType, StorageStrategy >::operator=(self_type const &rhs) | BTKContainer | [protected] |
| operator==(self_type const &rhs) const | Polymer | |
| BTK::MOLECULES::PolymerStructure::operator==(self_type const &rhs) const | PolymerStructure | [protected] |
| BTK::UTILITY::ChemicallyTypedObject::operator==(self_type const &rhs) const | ChemicallyTypedObject | [protected] |
| BTK::UTILITY::BTKSequence< MonomerType, StorageStrategy >::operator==(self_type const &rhs) const | BTKContainer | [protected] |
| operator[](size_type n) | BTKContainer | [protected] |
| operator[](size_type n) const | BTKContainer | [protected] |
| pointer typedef | Polymer | |
| Polymer(size_type s=0, monomer_type const &m=monomer_type(), char chain_id= ' ', structure_id_type t=structure_id_type()) | Polymer | |
| Polymer(MonomerIterator first, MonomerIterator last, char chain_id= ' ', structure_id_type t=structure_id_type()) | Polymer | |
| Polymer(self_type const &source) | Polymer | |
| polymer_begin() | PolymerStructure | |
| polymer_begin() const | PolymerStructure | |
| polymer_end() | PolymerStructure | |
| polymer_end() const | PolymerStructure | |
| polymer_rbegin() | PolymerStructure | |
| polymer_rbegin() const | PolymerStructure | |
| polymer_rend() | PolymerStructure | |
| polymer_rend() const | PolymerStructure | |
| PolymerStructure(self_type const &source) | PolymerStructure | |
| PolymerStructure(size_type n=0, const_reference t=value_type(), id_type type=id_type()) | PolymerStructure | [protected] |
| PolymerStructure(MonomerIterator i, MonomerIterator j, id_type type=id_type()) | PolymerStructure | [protected] |
| print(std::ostream &os, size_type first_atom_num=1, size_type first_monomer_num=1) const | Polymer | [virtual] |
| BTK::MOLECULES::PolymerStructure::print(std::ostream &os, size_type first_atom_num=1, size_type first_group_num=1, char chain_id= ' ') const | PolymerStructure | [virtual] |
| rbegin() | BTKContainer | [protected] |
| rbegin() const | BTKContainer | [protected] |
| reference typedef | Polymer | |
| rend() | BTKContainer | [protected] |
| rend() const | BTKContainer | [protected] |
| resize(size_type n, const_reference t=value_type()) | BTKSequence< MonomerType, StorageStrategy > | [protected, virtual] |
| reverse_atom_iterator typedef | Polymer | |
| reverse_iterator typedef | Polymer | |
| reverse_monomer_iterator typedef | Polymer | |
| set_chain_id(char chain_id) | Polymer | |
| set_chemical_type_system(chemical_type_system const &cts) | PolymerStructure | [virtual] |
| BTK::UTILITY::ChemicallyTypedObject::set_chemical_type_system(chemical_type_system const &ts) | ChemicallyTypedObject | [protected, virtual] |
| set_type(id_type t) | ChemicallyTypedObject | [protected, virtual] |
| size() const | BTKContainer | [protected] |
| size_type typedef | Polymer | |
| structure_begin() | Polymer | |
| structure_begin() const | Polymer | |
| structure_end() | Polymer | |
| structure_end() const | Polymer | |
| structure_id_type typedef | Polymer | |
| structure_rbegin() | Polymer | |
| structure_rbegin() const | Polymer | |
| structure_rend() | Polymer | |
| structure_rend() const | Polymer | |
| swap(self_type &b) | Polymer | |
| BTK::MOLECULES::PolymerStructure::swap(self_type &b) | PolymerStructure | [protected] |
| BTK::UTILITY::ChemicallyTypedObject::swap(self_type &rhs) | ChemicallyTypedObject | [protected] |
| BTK::UTILITY::BTKSequence< MonomerType, StorageStrategy >::swap(self_type &b) | BTKContainer | [protected] |
| type() const | ChemicallyTypedObject | |
| value_type typedef | Polymer | |
| ~BTKContainer() | BTKContainer | [protected, virtual] |
| ~BTKSequence() | BTKSequence< MonomerType, StorageStrategy > | [protected, virtual] |
| ~ChemicallyTypedObject() | ChemicallyTypedObject | [virtual] |
| ~Polymer() | Polymer | [virtual] |
| ~PolymerStructure() | PolymerStructure | [virtual] |