| _storage | BTKContainer | [protected] |
| atom_id_type typedef | Monomer | |
| atom_iterator typedef | Monomer | |
| atom_type typedef | Monomer | |
| AtomicStructure(self_type const &source) | AtomicStructure | |
| AtomicStructure(size_type n=0, const_reference t=value_type(), id_type type=id_type()) | AtomicStructure | [protected] |
| AtomicStructure(AtomIterator i, AtomIterator j, id_type type=id_type()) | AtomicStructure | [protected] |
| begin() | BTKContainer | [protected] |
| begin() const | BTKContainer | [protected] |
| BTKContainer(self_type const &source) | BTKContainer | [protected] |
| BTKContainer(size_type n=0, const_reference t=value_type()) | BTKContainer | [protected] |
| BTKContainer(InputIterator i, InputIterator j) | BTKContainer | [protected] |
| BTKSequence(self_type const &source) | BTKSequence< AtomType, StorageStrategy > | [protected] |
| BTKSequence(size_type n=0, const_reference t=value_type()) | BTKSequence< AtomType, StorageStrategy > | [protected] |
| BTKSequence(InputIterator i, InputIterator j) | BTKSequence< AtomType, StorageStrategy > | [protected] |
| chemical_type_system typedef | Monomer | |
| ChemicallyTypedObject(chemical_type_system const &ts=chemical_type_system(), id_type t=id_type()) | ChemicallyTypedObject | |
| ChemicallyTypedObject(self_type const &src) | ChemicallyTypedObject | |
| clear() | BTKSequence< AtomType, StorageStrategy > | [protected, virtual] |
| const_atom_iterator typedef | Monomer | |
| const_iterator typedef | Monomer | |
| const_pointer typedef | Monomer | |
| const_reference typedef | Monomer | |
| const_reverse_atom_iterator typedef | Monomer | |
| const_reverse_iterator typedef | Monomer | |
| dictionary typedef | Monomer | |
| difference_type typedef | Monomer | |
| empty() const | BTKContainer | [protected] |
| end() | BTKContainer | [protected] |
| end() const | BTKContainer | [protected] |
| erase(iterator p) | BTKSequence< AtomType, StorageStrategy > | [protected, virtual] |
| erase(iterator p, iterator q) | BTKSequence< AtomType, StorageStrategy > | [protected, virtual] |
| front() | BTKSequence< AtomType, StorageStrategy > | [protected] |
| front() const | BTKSequence< AtomType, StorageStrategy > | [protected] |
| get_chemical_type_system() const | ChemicallyTypedObject | |
| get_chemical_type_system() | ChemicallyTypedObject | |
| get_dictionary() const | Monomer | [virtual] |
| get_dictionary() | Monomer | [virtual] |
| id_type typedef | Monomer | |
| insert(iterator p, const_reference t) | BTKSequence< AtomType, StorageStrategy > | [protected, virtual] |
| insert(iterator p, size_type n, const_reference t) | BTKSequence< AtomType, StorageStrategy > | [protected, virtual] |
| insert(iterator p, InputIterator i, InputIterator j) | BTKSequence< AtomType, StorageStrategy > | [protected] |
| iterator typedef | Monomer | |
| max_size() const | BTKContainer | [protected] |
| Monomer(unsigned n=0, atom_type const &a=atom_type(), id_type type=id_type(), int number=0) | Monomer | |
| Monomer(AtomIterator i, AtomIterator j, monomer_id_type type, int number) | Monomer | |
| Monomer(self_type const &source) | Monomer | |
| monomer_begin() | Monomer | |
| monomer_begin() const | Monomer | |
| monomer_end() | Monomer | |
| monomer_end() const | Monomer | |
| monomer_id_type typedef | Monomer | |
| monomer_rbegin() | Monomer | |
| monomer_rbegin() const | Monomer | |
| monomer_rend() | Monomer | |
| monomer_rend() const | Monomer | |
| name() const | ChemicallyTypedObject | |
| num_atoms() const | AtomicStructure | |
| number() const | Monomer | |
| operator!=(self_type const &rhs) const | Monomer | |
| BTK::UTILITY::ChemicallyTypedObject::operator!=(self_type const &rhs) const | ChemicallyTypedObject | [protected] |
| BTK::UTILITY::BTKSequence< AtomType, StorageStrategy >::operator!=(self_type const &rhs) const | BTKContainer | [protected] |
| operator<(self_type const &rhs) const | Monomer | |
| BTK::UTILITY::ChemicallyTypedObject::operator<(self_type const &rhs) const | ChemicallyTypedObject | [protected] |
| BTK::UTILITY::BTKSequence< AtomType, StorageStrategy >::operator<(self_type const &rhs) const | BTKContainer | [protected] |
| operator=(self_type const &rhs) | Monomer | |
| BTK::UTILITY::ChemicallyTypedObject::operator=(self_type const &src) | ChemicallyTypedObject | [protected] |
| BTK::UTILITY::BTKSequence< AtomType, StorageStrategy >::operator=(self_type const &rhs) | BTKContainer | [protected] |
| operator==(self_type const &rhs) const | Monomer | |
| BTK::UTILITY::ChemicallyTypedObject::operator==(self_type const &rhs) const | ChemicallyTypedObject | [protected] |
| BTK::UTILITY::BTKSequence< AtomType, StorageStrategy >::operator==(self_type const &rhs) const | BTKContainer | [protected] |
| operator[](size_type n) | BTKContainer | [protected] |
| operator[](size_type n) const | BTKContainer | [protected] |
| pointer typedef | Monomer | |
| print(std::ostream &os, size_type first_atom_num=1, size_type group_num=1, char chain_id= ' ') const | AtomicStructure | [virtual] |
| rbegin() | BTKContainer | [protected] |
| rbegin() const | BTKContainer | [protected] |
| reference typedef | Monomer | |
| rend() | BTKContainer | [protected] |
| rend() const | BTKContainer | [protected] |
| resize(size_type n, const_reference t=value_type()) | BTKSequence< AtomType, StorageStrategy > | [protected, virtual] |
| reverse_atom_iterator typedef | Monomer | |
| reverse_iterator typedef | Monomer | |
| select(bool s=true) const | Monomer | |
| selected() const | Monomer | |
| set_chemical_type_system(chemical_type_system const &cts) | AtomicStructure | [virtual] |
| BTK::UTILITY::ChemicallyTypedObject::set_chemical_type_system(chemical_type_system const &ts) | ChemicallyTypedObject | [protected, virtual] |
| set_number(int number) | Monomer | |
| set_type(id_type t) | ChemicallyTypedObject | [protected, virtual] |
| size() const | BTKContainer | [protected] |
| size_type typedef | Monomer | |
| structure_begin() | AtomicStructure | |
| structure_begin() const | AtomicStructure | |
| structure_end() | AtomicStructure | |
| structure_end() const | AtomicStructure | |
| structure_id_type typedef | Monomer | |
| structure_rbegin() | AtomicStructure | |
| structure_rbegin() const | AtomicStructure | |
| structure_rend() | AtomicStructure | |
| structure_rend() const | AtomicStructure | |
| swap(self_type &b) | Monomer | |
| BTK::UTILITY::ChemicallyTypedObject::swap(self_type &rhs) | ChemicallyTypedObject | [protected] |
| BTK::UTILITY::BTKSequence< AtomType, StorageStrategy >::swap(self_type &b) | BTKContainer | [protected] |
| type() const | ChemicallyTypedObject | |
| value_type typedef | Monomer | |
| ~AtomicStructure() | AtomicStructure | [virtual] |
| ~BTKContainer() | BTKContainer | [protected, virtual] |
| ~BTKSequence() | BTKSequence< AtomType, StorageStrategy > | [protected, virtual] |
| ~ChemicallyTypedObject() | ChemicallyTypedObject | [virtual] |
| ~Monomer() | Monomer | [virtual] |