| _storage | BTKContainer | [protected] |
| atom_iterator typedef | PDBSystem | |
| atom_type typedef | PDBSystem | |
| begin() | BTKContainer | |
| begin() const | BTKContainer | |
| BTKContainer(self_type const &source) | BTKContainer | |
| BTKContainer(size_type n=0, const_reference t=value_type()) | BTKContainer | [protected] |
| BTKContainer(InputIterator i, InputIterator j) | BTKContainer | [protected] |
| BTKSequence(self_type const &source) | BTKSequence | |
| BTKSequence(size_type n=0, const_reference t=value_type()) | BTKSequence | |
| BTKSequence(InputIterator i, InputIterator j) | BTKSequence | |
| chain_iterator typedef | PDBSystem | |
| chain_type typedef | PDBSystem | |
| chemical_type_system typedef | PDBSystem | |
| ChemicallyTypedObject(chemical_type_system const &ts=chemical_type_system(), id_type t=id_type()) | ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary > | |
| ChemicallyTypedObject(self_type const &src) | ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary > | |
| clear() | BTKSequence | [virtual] |
| close() | PDBSystem | |
| const_atom_iterator typedef | PDBSystem | |
| const_chain_iterator typedef | PDBSystem | |
| const_iterator typedef | PDBSystem | |
| const_monomer_iterator typedef | PDBSystem | |
| const_pointer typedef | PDBSystem | |
| const_reference typedef | PDBSystem | |
| const_reverse_atom_iterator typedef | PDBSystem | |
| const_reverse_chain_iterator typedef | PDBSystem | |
| const_reverse_iterator typedef | PDBSystem | |
| const_reverse_monomer_iterator typedef | PDBSystem | |
| dictionary typedef | PDBSystem | |
| difference_type typedef | PDBSystem | |
| empty() const | BTKContainer | |
| end() | BTKContainer | |
| end() const | BTKContainer | |
| erase(iterator p) | BTKSequence | [virtual] |
| erase(iterator p, iterator q) | BTKSequence | [virtual] |
| filename() const | PDBSystem | |
| front() | BTKSequence | |
| front() const | BTKSequence | |
| get_chemical_type_system() const | ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary > | |
| get_chemical_type_system() | ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary > | |
| get_dictionary() const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | [virtual] |
| get_dictionary() | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | [virtual] |
| get_model(int which, bool load_hetatoms=true) | PDBSystem | |
| get_next_model(bool load_hetatoms=true) | PDBSystem | |
| header() const | PDBSystem | |
| id_type typedef | PDBSystem | |
| insert(iterator p, const_reference t) | BTKSequence | [virtual] |
| insert(iterator p, size_type n, const_reference t) | BTKSequence | [virtual] |
| insert(iterator p, InputIterator i, InputIterator j) | BTKSequence | |
| iterator typedef | PDBSystem | |
| max_size() const | BTKContainer | |
| monomer_iterator typedef | PDBSystem | |
| monomer_type typedef | PDBSystem | |
| name() const | ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary > | |
| num_atoms() const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| num_chains() const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| open(std::string filename, int which_model=0) | PDBSystem | |
| operator!=(self_type const &rhs) const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| BTK::UTILITY::ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary >::operator!=(self_type const &rhs) const | ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary > | [protected] |
| operator<(self_type const &rhs) const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| BTK::UTILITY::ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary >::operator<(self_type const &rhs) const | ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary > | [protected] |
| operator=(self_type const &rhs) | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| BTK::UTILITY::ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary >::operator=(self_type const &src) | ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary > | [protected] |
| operator==(self_type const &rhs) const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| BTK::UTILITY::ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary >::operator==(self_type const &rhs) const | ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary > | [protected] |
| operator[](size_type n) | BTKContainer | |
| operator[](size_type n) const | BTKContainer | |
| PDBSystem(std::string const &filename, int which_model, bool load_hetatoms=true, bool dynamic_types=true, chemical_type_system const &cts=chemical_type_system()) | PDBSystem | |
| PDBSystem(std::string const &filename, bool load_hetatoms=true, bool dynamic_types=true, chemical_type_system const &cts=chemical_type_system()) | PDBSystem | |
| PDBSystem(size_type n=0, const_reference t=chain_type()) | PDBSystem | |
| PDBSystem(ChainIterator begin, ChainIterator end) | PDBSystem | |
| PDBSystem(PDBSystem const &src) | PDBSystem | |
| pointer typedef | PDBSystem | |
| print(std::ostream &os, size_type first_atom_num=1) const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | [virtual] |
| rbegin() | BTKContainer | |
| rbegin() const | BTKContainer | |
| reference typedef | PDBSystem | |
| rend() | BTKContainer | |
| rend() const | BTKContainer | |
| resize(size_type n, const_reference t=value_type()) | BTKSequence | [virtual] |
| reverse_atom_iterator typedef | PDBSystem | |
| reverse_chain_iterator typedef | PDBSystem | |
| reverse_iterator typedef | PDBSystem | |
| reverse_monomer_iterator typedef | PDBSystem | |
| set_chemical_type_system(chemical_type_system const &cts) | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | [virtual] |
| BTK::UTILITY::ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary >::set_chemical_type_system(chemical_type_system const &ts) | ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary > | [protected, virtual] |
| set_type(id_type t) | ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary > | [protected, virtual] |
| size() const | BTKContainer | |
| size_type typedef | PDBSystem | |
| structure_begin() | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| structure_begin() const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| structure_end() | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| structure_end() const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| structure_id_type typedef | PDBSystem | |
| structure_rbegin() | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| structure_rbegin() const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| structure_rend() | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| structure_rend() const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| swap(self_type &b) | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | [virtual] |
| BTK::UTILITY::ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary >::swap(self_type &rhs) | ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary > | [protected] |
| System(chemical_type_system const &cts, id_type type=id_type()) | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| System(size_type n=0, const_reference t=chain_type(), id_type type=id_type()) | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| System(ChainIterator i, ChainIterator j, id_type type=id_type()) | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| System(self_type const &src) | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| system_begin() | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| system_begin() const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| system_end() | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| system_end() const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| system_rbegin() | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| system_rbegin() const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| system_rend() | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| system_rend() const | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | |
| type() const | ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary > | |
| value_type typedef | PDBSystem | |
| ~BTKContainer() | BTKContainer | [virtual] |
| ~BTKSequence() | BTKSequence | [virtual] |
| ~ChemicallyTypedObject() | ChemicallyTypedObject< ChemicalTypeSystemType, ChemicalTypeSystemType::structure_dictionary > | [virtual] |
| ~PDBSystem() | PDBSystem | [virtual] |
| ~System() | System< PolymerType, ChemicalTypeSystemType, StorageStrategy > | [virtual] |
