BTK::PeptideHeavyAtomFamilyPattern Class Reference

#include <peptide_heavy_atom_family_pattern.h>

Inheritance diagram for BTK::PeptideHeavyAtomFamilyPattern:

[legend]Collaboration diagram for BTK::PeptideHeavyAtomFamilyPattern:

[legend]List of all members.

Public Types
typedef base_type::types	types
typedef std::pair< int, ATOM::index_t >	monomer_atom_idx_t
typedef AtomIndexPair	bond_t
typedef AtomIndexTetrad	tetrad_t
typedef std::set< ATOM::index_t >	atom_container_t
typedef std::set< bond_t >	bond_container_t
typedef std::set< tetrad_t >	tetrad_container_t
typedef boost::tuple< monomer_atom_idx_t, monomer_atom_idx_t, monomer_atom_idx_t, monomer_atom_idx_t >	torsion_atom_t
Public Member Functions
atom_container_t	atoms (GROUP::index_t g, AtomGroupConcept::group_variant_container_t v) const
bond_container_t	bonds (GROUP::index_t g, AtomGroupConcept::group_variant_container_t v) const
tetrad_container_t	tetrads (GROUP::index_t g, AtomGroupConcept::group_variant_container_t v, monomer_atom_idx_t ma) const
torsion_atom_t	torsion_atoms (GROUP::index_t g, TORSION::index_t t) const
Static Public Member Functions
const self_type &	instance ()
Protected Types
typedef std::map< monomer_atom_idx_t, tetrad_container_t >	tetrad_map_t
typedef std::map< TORSION::index_t, torsion_atom_t >	torsion_atom_map_t
typedef std::map< GROUP_VARIANT::index_t, member_modifier_t >	member_modifier_map_t
typedef std::map< GROUP::index_t, modifiable_member_pattern_t >	member_map_t
Protected Member Functions
	PeptideHeavyAtomFamilyPattern ()
virtual types::family_pattern_t &	family_pattern ()
virtual const types::family_pattern_t &	family_pattern () const
void	tetrad_helper (GROUP::index_t g, int i1, ATOM::index_t a1, int i2, ATOM::index_t a2, int i3, ATOM::index_t a3, int i4, ATOM::index_t a4, double l, double a, double d, bool r)

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Member Typedef Documentation

typedef std::set<ATOM::index_t> BTK::BuildableMonomerFamilyPattern::atom_container_t [inherited]

typedef std::set<bond_t> BTK::BuildableMonomerFamilyPattern::bond_container_t [inherited]

typedef AtomIndexPair BTK::BuildableMonomerFamilyPattern::bond_t [inherited]

typedef std::map<GROUP::index_t,modifiable_member_pattern_t> BTK::BuildableMonomerFamilyPattern::member_map_t [protected, inherited]

typedef std::map<GROUP_VARIANT::index_t,member_modifier_t> BTK::BuildableMonomerFamilyPattern::member_modifier_map_t [protected, inherited]

typedef std::pair<int,ATOM::index_t> BTK::BuildableMonomerFamilyPattern::monomer_atom_idx_t [inherited]

typedef std::set<tetrad_t> BTK::BuildableMonomerFamilyPattern::tetrad_container_t [inherited]

typedef std::map<monomer_atom_idx_t,tetrad_container_t> BTK::BuildableMonomerFamilyPattern::tetrad_map_t [protected, inherited]

typedef AtomIndexTetrad BTK::BuildableMonomerFamilyPattern::tetrad_t [inherited]

typedef std::map<TORSION::index_t,torsion_atom_t> BTK::BuildableMonomerFamilyPattern::torsion_atom_map_t [protected, inherited]

typedef boost::tuple<monomer_atom_idx_t,monomer_atom_idx_t, monomer_atom_idx_t,monomer_atom_idx_t> BTK::BuildableMonomerFamilyPattern::torsion_atom_t [inherited]

typedef base_type::types BTK::PeptideHeavyAtomFamilyPattern::types

Reimplemented from BTK::PeptideBBFamilyPattern.

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Constructor & Destructor Documentation

PeptideHeavyAtomFamilyPattern::PeptideHeavyAtomFamilyPattern (   )  [protected]

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Member Function Documentation

atom_container_t BTK::BuildableMonomerFamilyPattern::atoms (  GROUP::index_t  g, AtomGroupConcept::group_variant_container_t  v )  const [inline, inherited]

bond_container_t BTK::BuildableMonomerFamilyPattern::bonds (  GROUP::index_t  g, AtomGroupConcept::group_variant_container_t  v )  const [inline, inherited]

virtual const types::family_pattern_t& BTK::PeptideHeavyAtomFamilyPattern::family_pattern (   )  const [inline, protected, virtual]

Reimplemented from BTK::PeptideBBFamilyPattern.

virtual types::family_pattern_t& BTK::PeptideHeavyAtomFamilyPattern::family_pattern (   )  [inline, protected, virtual]

Reimplemented from BTK::PeptideBBFamilyPattern.

const self_type& BTK::PeptideHeavyAtomFamilyPattern::instance (   )  [inline, static]

Reimplemented from BTK::PeptideBBFamilyPattern.

void BuildableMonomerFamilyPattern::tetrad_helper (  GROUP::index_t  g, int  i1, ATOM::index_t  a1, int  i2, ATOM::index_t  a2, int  i3, ATOM::index_t  a3, int  i4, ATOM::index_t  a4, double  l, double  a, double  d, bool  r )  [protected, inherited]

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tetrad_container_t BTK::BuildableMonomerFamilyPattern::tetrads (  GROUP::index_t  g, AtomGroupConcept::group_variant_container_t  v, monomer_atom_idx_t  ma )  const [inline, inherited]

torsion_atom_t BTK::BuildableMonomerFamilyPattern::torsion_atoms (  GROUP::index_t  g, TORSION::index_t  t )  const [inline, inherited]

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The documentation for this class was generated from the following files:

• peptide_heavy_atom_family_pattern.h
• peptide_heavy_atom_family_pattern.cpp

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